Monday, December 14, 2009

If questioning would make us wise
No eyes would ever gaze in eyes;
If all our tale were told in speech
No mouths would wander each to each.

Were spirits free from mortal mesh
And love not bound in hearts of flesh
No aching breasts would yearn to meet
And find their ecstasy complete.

For who is there that lives and knows
The secret powers by which he grows?
Were knowledge all, what were our need
To thrill and faint and sweetly bleed?.

Then seek not, sweet, the "If" and "Why"
I love you now until I die.
For I must love because I live
And life in me is what you give.

Because She Would Ask Me Why I Loved Her
a poem by Christopher Brennan

Saturday, October 24, 2009

Bliss

Bliss comes in many forms and what is considered bliss differs from person to person, but I am sure that there are trends. One form that bliss takes for me is yoga. Doing yoga was the first time in my life that I experienced complete happiness and satisfaction with myself. I stopped judging and criticizing and just marveled at what my body is capable of.

Sunday, October 18, 2009

Yoga with Tara Stiles

There are a lot of wonderful and inspiring yoga teachers out there. Usually though if you want to learn from them you have to buy their book or DVD or travel to a distant city where they usually teach. Not so in the case of Tara Stiles who posts wonderful yoga instruction segments on her Youtube channel TaraStilesLiving.

Monday, October 12, 2009

eye candy

Wired.com has a great collection of images of microscope photography. One of the most exciting aspects of being a biologist is being able to look into the world of tiny things and marvel at their complexity and detail. I think images like these will spark an interest in science in anyone and maybe even the desire to find out more about the object being photographed. Photos are one of the major ways that people relate with one another and share their experiences. It is a great way for scientists to share their work with non-scientists and generate excitement and curiosity.

Tuesday, October 6, 2009

Inspiration

Bach's Prelude to Cello Suite No.1
Performance by Mstislav Rostropovich.

Paganini's Caprice 24 played by Yo Yo Ma. This one is just a recording. There is a great video of this piece performed by Wells Cunningham.

Friday, September 11, 2009

Fun stuff to do when I'm done with my PHD

When deadlines are looming, I get easily distracted. It seems as if there is a whole world of fun stuff out there that I must partake in. However I realize that if I do, I will not finish my PHD in the timeframe I have set out. Hence I am making this list so that my mind can rest free that I will still remember to do all the fun stuff when the serious part is over (before the next serious part begins :)

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Tuesday, July 7, 2009

say it right

The reality of language is that it is not a static thing, but that it is constantly changing. Words acquire new meanings over time, slang twists words and even makes then change their lexical categories, outdated words are discarded and new words are imported from foreign languages. It is in our nature to resist change therefore as we get older the bastardization of language becomes increasingly jarring. I am sure many people have their own criteria of word mis-use that they find appalling; I would like to share a few of mine.

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Monday, June 15, 2009

change of heart

Very recently I made a decision about my future. For quite some time I have been seriously planning on leaving the bench upon completion of the phd and seeking a job as an editor. I do, afterall, love to edit. However I came to the conclusion that I am not ready to leave experimental research, because I suddenly remembered why it was I started to do research in the first place.

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podcasts

I tend to be slow and resistant to new technologies. I didn't own a computer until I started grad school (2002). I didn't get a cell phone until by parents gave me one on my birthday (2004). I only started blogging last year (very hesitantly at that). Although I've had an apple computer from the onset and have had an ipod for the last three years it was not until last year that I started to explore podcasts. Actually, just one, Japanesepod101 for learning Japanese, and not until last week that I started listening to science related podcasts and realized that I have been missing something great.

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Monday, June 8, 2009

What's in your genome?

A genome is just a word to describe all the genetic (inheritable) content of an organism. It is a way to describe a full set of chromosomes. Each cell in the human body contains a full genome. The cells are different because a different set of genes are active at any given time. That is why a liver cell and a skin cell look different and perform different functions and yet have the same genetic material. An exception are the germ cells (the egg and sperm) that contain half the the full set of chromosomes, so half of the genome. Just a few years ago finding out the sequence of a single gene was a big deal. These days the human genome is sequenced along with many other organisms making it possible to compare genes between species. Genomics (the study of genomes) is becoming an everyday thing. To keep up with all the latest news genomics news check out:the genome web.

Tuesday, May 19, 2009

Intellectual freedom

I read an article today that has made me really happy. There is a lawsuit out there aiming to abolish the patenting of genes. Companies have been engaged in a disturbing practice of patenting genes. This means that any research or clinical testing involving these genes requires a license. This concept is ridiculous! How can anyone own the rights to a gene?! Luckily many people, scientists and patients, hold the same opinion and it looks like this lawsuit might be the one to do away with gene patenting once and for all.

This week, the ACLU, several breast cancer survivors, and professional groups representing more than 150,000 scientists, sued Myriad Genetics over their breast cancer gene patents. Those genes, mutated forms of BRCA1 and BRCA2, are responsible for most cases of hereditary breast and ovarian cancer. They’re also very lucrative, because Myriad has created something of a monopoly. It charges $3,000 per test, which often isn’t covered by insurance. No one else can offer the test, and researchers can’t develop new or cheaper ones (or new therapies for that matter) unless they get permission from Myriad and pay a steep licensing fee. So women have no choice about who performs their tests, and they can’t seek those second opinions. That is no small thing. Tests aren’t 100 percent accurate, and results sometimes come back inconclusive. Women with the BRCA1 and BRCA2 mutations have a 40 to 85 percent chance of developing breast cancer, so a positive result helps them decide whether to have their breasts and ovaries removed to prevent future cancer. But with its lawsuit, the ACLU isn’t just fighting Myriad’s patent—it hopes to end the practice of gene patenting entirely on the grounds that it’s illegal, unconstitutional, and interfering with science.
read the rest of the article by Rebecca Skloot...

Tuesday, May 12, 2009

chicken and carrots

This is a recipe I came up with last night for dinner. I liked it a lot and it went well with buckwheat, although I'm sure any grain would be just as complementary.

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Sunday, April 26, 2009

Funny and bizarre

They say laughter is the best medicine. I recently came across a site that leaves me laughing hysterically every time I read it.
engrish

I also came across this site, which documents the bizarre and unexplainable behavior of russians.

Friday, April 24, 2009

focus

I am the center of the cyclone, so whatever happens around me makes no difference to me. It may be turmoil or the beautiful sound of running water; I am just a witness to both, and that witnessing remains the same. As far as my innermost being is concerned, in every situation I am just the same. This is my whole teaching: that things may change, but your consciousness should remain absolutely unchanging.
-Osho

Friday, April 17, 2009

the wonder of embryogenesis

As a graduate student studying developmental biology* I try to understand how certain processes happen in the zebrafish embryo. When I started graduate school I wanted to study the genetics of cancer. However I quickly realized that a majority of this type of research involves giving cancer to mice (this is an overly simplified view). I didn't want to spend several years killing and cutting up mice so I explored other options. The first time I looked at a chick embryo under the microscope, I was sure that this was what I wanted to study. Watching an embryo develop over time, from a clump of cells to a living thing with functional organs felt like I was getting a peak into something miraculous. The cells knew what to do, they were following some sort of internal program that made the embryo develop the same way everytime. I really wanted to know more about the program driving this development. Initially my project was studying chick embryos, but about a year and a half ago I switched over to zebrafish. Their embryos are transparent and the whole process can be observed. The video below shows the first 24 hours of zebrafish development.

*developmental biology is the study of how a multicellular organism develops from its early immature form (embryo) into an adult. This is different from embryology, because developmental biology examines the molecular and genetic mechanisms that regulate the development of the embryo, while embryology looks at the structure and morphology of the developing embryo; it is based more on observation rather than experimentation.

Thursday, April 16, 2009

oyakodon

Over the past year as I've become curious about all things Japanese my knowledge of Japanese food has increased a lot. I used to just know sushi and soba, but now my vocabulary has expanded. Words like ochazuke, nikujaga and oyakodon bring up delicious memories in my mind. Oyakodon 親子丼 : おやこどん is one of my favorite and very easy to prepare dishes. Litteraly it means parent and child and consists of chicken and eggs plus onion. Traditional Japanese flavoring is a combination of soy sauce, sugar, sake, and mirin, which is a sweet cooking wine. I don't eat sugar, so the oyakodon I prepare takes a bit different, but still very delicious.

recipe below...

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Wednesday, April 15, 2009

things I found surprising about Japan




1. people stand on the left side of escalators, and walk on the right
2. fancy toilets with heated seats, bidets, and... um...sound effects
3. there is a little melody that accompanies the opening and closing of doors on subway trains
4. malls had pet stores with walls of tiny puppies in plexiglass enclosures
5. many small restaurants had you order food from a vending machine type device that had the food options listed. You pushed a button next to the meal of your choice, paid the money and collected a ticket, which you gave to the waiter inside.
6. no tipping. Not in restaurants, not in taxis.
7. taxi doors are opened and closed by the driver via a lever next to their seat.

Tuesday, April 14, 2009

cute baby animals



Baby animals are adorable, and not just mammals. There's something irresistibly endearing in tiny digits and giant eyes, as this collection of photos nicely demonstrates: link.

groovy tunes

I like listening to music; all kinds of music. Russian rock, latin guitar, american pop, classical, etc. What I'm listening to depends on my current mood. I like discovering new artists and finding out what other people are listening to. I never thought of this a s a hobby. I was taking an intorductory Japanese class in the fall and we were learning how to talk about our interests, music was one of the hobbies we learned how to say. 私の趣味は音楽です。(watashi no shumi wa ongaku desu. My hobby is music.)

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Sunday, April 12, 2009

how many sides does a triangle have?



I would like to think that with the internet becoming increasingly accessible to all, people nowadays would be better informed about the world around them. This video implies that this is not the case. Although they probably did pick and chose the answers featured in this video, it is still sad to watch.

Friday, April 10, 2009

full moon - crazy afternoon

The full moon has a strong effect on me. I feel restless, full of energy, creative. I am usually productive in unexpected ways and more decisive. Today it seems I cannot stop writing. I should put this energy into writing a scientific paper, but I guess I have a need to write down my thoughts today.

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grad school update

Back in October I wrote about my ambitious plan to defend my thesis by May 8th. Well, that is not going to happen. Experiments take longer to do than expected. Results are ambiguous and need follow-up experiments to be clarified. Procrastination happens periodically. However, my new deadline is August/September. In my current position I think this is a doable goal. I now have real results, I am working on my first paper and I can see the light at the end of the tunnel get brighter everyday.

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write something

Today I took the day off from going to lab to "work at home", because I really need to make my data into figures. However true to self, I managed to do everything but.

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Tuesday, February 3, 2009

Rice-cooker Meals

Soon after I moved into my current apartment last fall, we realized that our ancient monstrosity of a stove was leaking gas. It took just over a month for our landlord to acknowledge that there was a problem and buy us a new stove. In the meantime I had to figure out how to make home-cooked meals without a stove.

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Tuesday, January 27, 2009

How are you?

I am learning Japanese. I am planning to move to Japan when I finish my phd. Japan is a beautiful country, I am really looking forward to moving there and so I am trying to learn Japanese.

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Sunday, January 25, 2009

Comfort food

When I was younger I was not very discriminating in my food choices and I had a good appetite, as a result, by the time I graduated from high school, I was quite a bit overweight. It didn't bother me too much. I liked to study and to hang out by myself. I spent a lot of time reading, and thinking; the world outside my head didn't interest me much. When I started graduate school, however, my perspective started to change. A major reason for this was discovering yoga. I started to realize that even though I have a good imagination, the real world is a lot more fun.

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Insight

Today I had another realization. Part of the reason I often feel stressed and procrastinate is because I think too much about the possible outcomes of actions. I like making plans: planning my experiments, thinking up step-by-step recipe instructions, mapping out the routes to take to different places, organizing my schedule...even with simple tasks like doing laundry, I spend some time thinking about the order of loads. This is itself, although time-consuming, is not the reason I get in my own way.

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Monday, January 19, 2009

Yoga

One of my favorite yoga teachers, David Vendetti, writes in his biosketch "Yoga allows me to be who I am without struggle." My feelings about yoga are very similar.

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Sunday, January 18, 2009

"clench your troubles in your fist"

I like complaining. I freely admit it. Sometimes it just feels nice to whine about the difficulties of life especially if there is someone to commiserate with. However I am also aware of the power of influence of one person's mood on that of others. Someone who is always negative and unproductive is unpleasant to be around. It often feels like their bad mood and negativity is a black hole that sucks up all joy and motivation around it. On the other hand, positivity and productivity are just an infectious: it is easy to get inspired by someone else's positive attitude, especially if it is sincere and lacking in arrogance. Therefore I try my best to keep my sad, negative, defeatist thoughts private, especially when talking to people I care about, because I know their lives are not any easier than mine but they still try to cheer me up when they think I might be feeling down. One source of great inspiration to me is my grandfather. He is a retired engineer who worked very hard well into his seventies and always speaks of his job with enthusiasm. He is constantly saying motivating things to me and although I probably don't tell him often enough, I am very grateful.

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Thursday, January 15, 2009

Thoughts on a New Year

This year, I hope, will be my most productive yet in graduate school. That is I plan to finish graduate school with at least one publication and FINALLY after 7 years of wondering around in search of myself get a real job and start an actual career. Just over a week ago I got married. It feels nice to know that there is a person there who is also committed to our future together. And although we don't know what our future will be like, or even when we'll live in the same country, it's nice to know that we have a strong bond holding us together. It may be old-fashioned, but being married makes me feel more calm and secure. So I'm counting it as a good thing. I hopefully now can focus more fully on my thesis research.
A New Year and lots to be done. No time to waste!